Publications

(2023). Three-dimensional assessments are necessary to determine the true spatial tissue composition of diseased tissues. bioRxiv.

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(2023). Power-law growth models explain incidences and sizes of pancreatic cancer precursor lesions and confirm spatial genomic findings. bioRxiv.

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(2023). Learning with limited target data to detect cells in cross-modality images. Medical Image Analysis.

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(2023). Three-dimensional genomic mapping of human pancreatic tissue reveals striking multifocality and genetic heterogeneity in precancerous lesions. bioRxiv: The Preprint Server for Biology.

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(2023). Cybersecurity and Information Assurance for the Clinical Laboratory. The Journal of Applied Laboratory Medicine.

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(2022). CODA: quantitative 3D reconstruction of large tissues at cellular resolution. Nature Methods.

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(2022). Tissue Displacement Versus Two Primary Colorectal Carcinomas? A Case Report on the Utility of Comparative Sequencing. JCO precision oncology.

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(2022). Low-Resource Adversarial Domain Adaptation for Cross-Modality Nucleus Detection. Medical image computing and computer-assisted intervention: MICCAI … International Conference on Medical Image Computing and Computer-Assisted Intervention.

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(2022). Interactive Multimedia Reporting Technical Considerations: HIMSS-SIIM Collaborative White Paper. Journal of Digital Imaging.

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(2022). Trends in dermatology eponyms. JAAD Int.

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(2022). Are You Prepared? Laboratory Downtime in the Ransomware Era. Am J Clin Pathol.

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(2022). Whole Slide Imaging Hardware, Software, and Infrastructure. Whole Slide Imaging.

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(2022). Whole Slide Imaging and Telepathology. Whole Slide Imaging.

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(2021). Bidirectional Mapping-Based Domain Adaptation for Nucleus Detection in Cross-Modality Microscopy Images. IEEE Trans Med Imaging.

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(2021). Multispecialty Enterprise Imaging Workgroup Consensus on Interactive Multimedia Reporting Current State and Road to the Future: HIMSS-SIIM Collaborative White Paper. J Digit Imaging.

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(2021). Eponyms in clinical chemistry. Clin Chim Acta.

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(2021). Artificial intelligence for pathology. Artificial Intelligence in Medicine.

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(2020). In situ characterization of the 3D microanatomy of the pancreas and pancreatic cancer at single cell resolution. bioRxiv.

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(2020). Generative Adversarial Domain Adaptation for Nucleus Quantification in Images of Tissue Immunohistochemically Stained for Ki-67.. JCO Clin Cancer Inform.

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(2020). Clinical Application of Image Analysis in Pathology. Adv Anat Pathol.

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(2020). Display Characteristics and Their Impact on Digital Pathology: A Current Review of Pathologists' Future "Microscope". J Pathol Inform.

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(2019). Pixel-to-Pixel Learning With Weak Supervision for Single-Stage Nucleus Recognition in Ki67 Images. IEEE Trans Biomed Eng.

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(2018). US Food and Drug Administration Approval of Whole Slide Imaging for Primary Diagnosis: A Key Milestone Is Reached and New Questions Are Raised. Arch Pathol Lab Med.

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(2018). HER2 Status in Gastroesophageal Adenocarcinomas: Correlation Between Immunohistochemistry and Fluorescence In Situ Hybridization Methodologies. Appl Immunohistochem Mol Morphol.

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(2017). Rapid Loss of RNA Detection by In Situ Hybridization in Stored Tissue Blocks and Preservation by Cold Storage of Unstained Slides. Am J Clin Pathol.

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(2017). PD-L1 Expression in Melanoma: A Quantitative Immunohistochemical Antibody Comparison. Clin Cancer Res.

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(2017). Patient Privacy and Clinical Laboratory Data.. Clin Chem.

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(2017). Association of HIV Status With Local Immune Response to Anal Squamous Cell Carcinoma: Implications for Immunotherapy. JAMA Oncol.

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(2017). Tough to Swallow: Esophageal Food Impaction from Esophageal Amyloidosis.. Dig Dis Sci.

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(2017). Patterns of PD-L1 expression and CD8 T cell infiltration in gastric adenocarcinomas and associated immune stroma.. Gut.

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(2017). Low Intratumoral Mast Cells Are Associated With a Higher Risk of Prostate Cancer Recurrence. Prostate.

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(2017). Preclinical Benefit of Hypoxia-Activated Intra-arterial Therapy with Evofosfamide in Liver Cancer. Clin Cancer Res.

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(2016). Metastatic progression is associated with dynamic changes in the local microenvironment. Nat Commun.

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(2016). Genome-wide characterization of human L1 antisense promoter-driven transcripts. BMC Genomics.

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(2016). Utilization of HPASubC for the Identification of Sinusoid-Specific Proteins in the Liver. J Proteome Res.

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(2016). Cytomegalovirus Enterocolitis in Immunocompetent Young Children: A Report of Two Cases and Review of the Literature.. Pediatr Infect Dis J.

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(2016). PD-L1 (B7-H1) expression and the immune tumor microenvironment in primary and metastatic breast carcinomas. Hum Pathol.

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(2016). A map of mobile DNA insertions in the NCI-60 human cancer cell panel. Mob DNA.

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(2015). (1)(8)F-DCFBC PET/CT for PSMA-Based Detection and Characterization of Primary Prostate Cancer. J Nucl Med.

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(2015). PD-1 Blockade in Tumors with Mismatch-Repair Deficiency. N Engl J Med.

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(2015). Liver metastases of small intestine neuroendocrine tumors: Ki-67 heterogeneity and World Health Organization grade discordance with primary tumors. Am J Clin Pathol.

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(2015). miRge - A Multiplexed Method of Processing Small RNA-Seq Data to Determine MicroRNA Entropy. PLoS One.

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(2015). HPASubC: A suite of tools for user subclassification of human protein atlas tissue images. J Pathol Inform.

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(2014). Radiologic-pathologic analysis of contrast-enhanced and diffusion- weighted MR imaging in patients with HCC after TACE: diagnostic accuracy of 3D quantitative image analysis. Radiology.

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(2014). Lessons from miR-143/145: the importance of cell-type localization of miRNAs. Nucleic Acids Res.

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(2014). Reproducibility of the Johns Hopkins Hospital template for urologic cytology samples.. J Am Soc Cytopathol.

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(2014). Fatal spontaneous Clostridium septicum gas gangrene: a possible association with iatrogenic gastric acid suppression.. Arch Pathol Lab Med.

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(2014). A single institution's 26-year experience with nonfunctional pancreatic neuroendocrine tumors: a validation of current staging systems and a new prognostic nomogram.. Ann Surg.

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(2014). High-resolution transrectal ultrasound: pilot study of a novel technique for imaging clinically localized prostate cancer. Urol Oncol.

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(2014). A critical evaluation of microRNA biomarkers in non-neoplastic disease. PLoS One.

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(2013). Grading of well-differentiated pancreatic neuroendocrine tumors is improved by the inclusion of both Ki67 proliferative index and mitotic rate.. Am J Surg Pathol.

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(2013). Translocation junctions in TCF3-PBX1 acute lymphoblastic leukemia/lymphoma cluster near transposable elements. Mob DNA.

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(2013). Software-automated counting of Ki-67 proliferation index correlates with pathologic grade and disease progression of follicular lymphomas. Am J Clin Pathol.

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(2013). Human papillomavirus clearance among males is associated with HIV acquisition and increased dendritic cell density in the foreskin. J Infect Dis.

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(2012). Yes-associated protein regulates the hepatic response after bile duct ligation. Hepatology.

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(2012). Whole-slide imaging: routine pathologic diagnosis. Adv Anat Pathol.

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(2011). A polymeric nanoparticle formulation of curcumin (NanoCurc) ameliorates CCl4-induced hepatic injury and fibrosis through reduction of pro- inflammatory cytokines and stellate cell activation. Lab Invest.

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(2011). Hyaline globules in neuroendocrine and solid-pseudopapillary neoplasms of the pancreas: a clue to the diagnosis. Am J Surg Pathol.

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(2011). Pancreatic Intraepithelial Neoplasia. Surg Pathol Clin.

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(2011). Neoplasms of the Small Intestine. Gastrointestinal and Liver Pathology.

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(2011). Effects of HIV-1 and herpes simplex virus type 2 infection on lymphocyte and dendritic cell density in adult foreskins from Rakai, Uganda. J Infect Dis.

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(2010). Morphologic characterization of syndromic gastric polyps. Am J Surg Pathol.

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(2010). Gastric lesions in patients with autoimmune metaplastic atrophic gastritis (AMAG) in a tertiary care setting.. Am J Surg Pathol.

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(2010). Clear cell change in colonic tubular adenoma and corresponding colonic clear cell adenocarcinoma is associated with an altered mucin core protein profile. Am J Surg Pathol.

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(2010). Creation, validation, and quantitative analysis of protein expression in vascular tissue microarrays. Cardiovasc Pathol.

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(2010). Tissue Microarrays in Cancer Research. Modern Molecular Biology.

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(2010). Characterization of human mesenchymal stem cell-engineered cartilage: analysis of its ultrastructure, cell density and chondrocyte phenotype compared to native adult and fetal cartilage.. Cells Tissues Organs.

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(2010). A comprehensive histopathological evaluation of vascular medial fibrosis: insights into the pathophysiology of arterial stiffening. Atherosclerosis.

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(2009). Glomerular protein levels of matrix metalloproteinase-1 and tissue inhibitor of metalloproteinase-1 are lower in diabetic subjects. J Histochem Cytochem.

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(2009). Color deconvolution for the analysis of tissue microarrays. Anal Quant Cytol Histol.

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(2009). Use of human vascular tissue microarrays for measurement of advanced glycation endproducts. J Histochem Cytochem.

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(2008). DNA hypomethylation arises later in prostate cancer progression than CpG island hypermethylation and contributes to metastatic tumor heterogeneity. Cancer Res.

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(2008). Nuclear MYC protein overexpression is an early alteration in human prostate carcinogenesis. Mod Pathol.

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(2002). Microcontact printing: a versatile technique for the study of synaptogenic molecules. Mol Cell Neurosci.

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(1999). Globular domains of agrin are functional units that collaborate to induce acetylcholine receptor clustering. J Cell Sci.

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(1998). Immunotoxicology of cigarette smoke condensates: suppression of macrophage responsiveness to interferon gamma. Toxicol Appl Pharmacol.

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